I’m new to Slicer and am working on a project trying to automate a few Slicer steps for many files by creating a python script and then running it without opening the Slicer GUI. I’ve been reading through sections in the slicer docs in particular the “Run a Python script file in the Slicer environm…

That process sounds very feasible. You’ll need to put together snippets of functionality from the script repository. I saw there weren’t specific batch processing examples so I put in a few examples in this PR .

Tips for getting started loading and batch segmenting files with Slicer in python?

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Mike_Flanigan (Mike Flanigan) September 5, 2022, 10:52pm 3

Thank you!
That script got me well ahead and working.
I do have two follow up questions now, but they’re rather distinct so I’ve made them new questions:

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Tips for getting started loading and batch segmenting files with Slicer in python?

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