TotalSegmentator Issues

[diazandr3s (Andres Diaz-Pinto)]

Hi @arflores,

Have you considered using Auto3DSeg on Slicer?

New extension: MONAI Auto3DSeg - raise the bar in AI medical image segmentation

New extension: MONAI Auto3DSeg - raise the bar in AI medical image segmentation MONAI Auto3DSeg extension is a collaboration between MONAI and 3D Slicer developer teams (led by Andres Diaz Pinto - NVIDIA and Andras Lasso - PerkLab) to improve on the state-of-the-art in fully automatic 3D medical image segmentation and make the results widely accessible. The extension comes with dozens of pre-trained segmentation models for specific clinical use cases, which are designed to be fast and run anywh…

Just downloaded the latest Slicer and then install Auto3DSeg using Extension Manager. We made several models available (full res and quick) incuding Spine segmentation.

Hope this helps,