Extracting a subnetwork from 3D volume

@lassoan Thanks a lot. I’m looking for ways to do the above tasks programmatically (in Python) and I’d a chance to go through this information provided here

This is for Jupyter notebooks, I would like to have the above workflow in a script and run it in a server.

The input will be the tiff images and the output will be the stl file. I am not sure how the clipping can be
done programmatically, so I wish to exclude that step for now.

Any help on how to set up the above workflow in Python will be of great help!

Thanks a lot