We would like to announce a new Slicer extension, MEMOS, for deep-learning based segmentation of diceCT scans of fetal mice. See the repository for quick installation instructions.
Accompanying paper can be found in Biology Open: Deep learning enabled multi-organ segmentation of mouse embryos | Biology Open | The Company of Biologists
Using GPU, MEMOs provide segmentation of 50 anatomical structures in the E15.5 atlas provided by the International Mouse Phenotyping Consortium in about 40-60 seconds.
In future, we plan to incorporate more developmental time points as a separate trained networks.
