Hi Guys!
I’ve recently downloaded a new extension built to segment muscles from multiple types of data. Unfortunatelly I haven’t managed to run it succesfully with GPU. CPU works perfectly fine. The authors can’t repeat this error to make some investigation, whats the cause of this issue.
And the issue is:
“Segmentation completed” but model is not rendered.
Bug details below:
Slicer_5.11.0-2026-02-04_34418_20260215_190811_656 (1).log
More details:
[Python] get_frame_offsets is deprecated and will be removed in v4.0
[VTK] Warning: In vtkSlicerTerminologiesModuleLogic.cxx, line 3370
[VTK] vtkSlicerTerminologiesModuleLogic (000001F3E0BDDDF0): LoadAnatomicContextFromFile is deprecated. Use LoadRegionContextFromFile instead.
[Qt] QPixmap::scaleWidth: Pixmap is a null pixmap
[Python] [MuscleMap] Could not apply JSON-based ColorTable: ‘MRMLCorePython.vtkMRMLLabelMapVolumeDisplayNode’ object has no attribute ‘SetInterpolate’
[VTK] GetColor: requested color entry -1039 is out of table range: 0 - 8162, call SetNumberOfColors to change the color table size.
[VTK] Warning: In vtkSlicerSegmentationsModuleLogic.cxx, line 1519
[VTK] vtkMRMLSegmentationNode (000001F3E34612F0): vtkSlicerSegmentationsModuleLogic::ImportLabelmapToSegmentationNode: Segmentation is a floating point scalar type and will be cast to an integer type. Voxel values may be truncated
[VTK] GetColor: requested color entry -1037 is out of table range: 0 - 8162, call SetNumberOfColors to change the color table size.
[VTK] GetColor: requested color entry -1036 is out of table range: 0 - 8162, call SetNumberOfColors to change the color table size.
[VTK] GetColor: requested color entry -1034 is out of table range: 0 - 8162, call SetNumberOfColors to change the color table size.
[VTK] GetColor: requested color entry -1033 is out of table range: 0 - 8162, call SetNumberOfColors to change the color table size.
[VTK] GetColor: requested color entry -1032 is out of table range: 0 - 8162, call SetNumberOfColors to change the color table size.
[VTK] GetColor: requested color entry -1030 is out of table range: 0 - 8162, call SetNumberOfColors to change the color table size.
[VTK] GetColor: requested color entry -1029 is out of table range: 0 - 8162, call SetNumberOfColors to change the color table size.
[VTK] GetColor: requested color entry -1027 is out of table range: 0 - 8162, call SetNumberOfColors to change the color table size.
[VTK] GetColor: requested color entry -1026 is out of table range: 0 - 8162, call SetNumberOfColors to change the color table size.
[VTK] GetColor: requested color entry -1024 is out of table range: 0 - 8162, call SetNumberOfColors to change the color table size.
[VTK] GetColor: requested color entry -1023 is out of table range: 0 - 8162, call SetNumberOfColors to change the color table size.
It seems like something crash during interpolate, maybe there is some “CUDA OUT OF MEMORY” error because I can see how GPU rises to 100% memory for a while during processing and then drops down to 0%. A few seconds later segmentation appears but in this pixel-thing form.
I’ve restarted multiple times multiple versions of Slicer starting from 5.4.0 to the newest. None of them are willing to work on GPU.
Does anyone have the same problem, or had and got up with the solution ??
Best regards
Bartek