Operating system: Mac OS catalina 10.15.3
Slicer version: 4.10.2
Hello, I was wondering if someone could help me with something that is probably very simple.
I have started using Slicer, due to lockdown. I have micro-CT scans of moth brains, which are provided to me in TIFF stacks.I wish to use the software to segment parts of the moth brain and quantify the volumes for each part. I previously used Avizo and was very much still a beginner with that.
I’ve managed to import the TIFF stack, but there is obviously no automatic information about sizing. I have the pixel size for each scan, for example 4.9292um.
I changed the units to um in the application settings and set the image spacing as 4.9292 x 4.9292 x 4.9292, but when I measure the volume of the segments, the values are very unrealistic. I am just wondering where I have gone wrong?
Thanks for any help anyone can give.