I’m applying the “Fill between slices” effect to two very similar images and I get the desired result in only one of them. Can someone take a look and let me know if you have any ideas to solve this? I expect two connected components and not three.
I tried (outside Slicer) all different combinations of the boolean parameters of itkMorphologicalContourInterpolator and got no improvements.
The interpolation algorithm assumes smoothly changing shape between segmented slices. If anywhere the interpolated contours are not accurate, all you have to do is segment some more slices. The interpolation will be updated automatically.