Hello everyone,
I am encountering an issue with the volume cropping functionality in 3D Slicer and would greatly appreciate any assistance or guidance you could provide.
When attempting to perform a volume crop Volume module, I am encountering errors that prevent the operation from completing successfully.
I followed these steps for volume cropping:
- Select image
- Create a ROI for cropping
- Create a new volume as output.
But, when I click “apply”, the selected image is not cropped.
Specifically, I am receiving these errors on Error Log:
- “Could not create an instance of “InverseDisplacementFieldTransform_double_3_3”
The usual cause of this error is not registering the transform with TransformFactory
Currently registered Transforms:
“AffineTransform_double_2_2”
“AffineTransform_double_3_3”
“AffineTransform_double_4_4”
“AffineTransform_float_2_2”
“AffineTransform_float_3_3”
“AffineTransform_float_4_4”
“AzimuthElevationToCartesianTransform_double_3_3”
“AzimuthElevationToCartesianTransform_float_3_3”
“BSplineDeformableTransform_double_2_2”
“BSplineDeformableTransform_double_3_3”
“BSplineDeformableTransform_float_2_2”
“BSplineDeformableTransform_float_3_3”
“BSplineSmoothingOnUpdateDisplacementFieldTransform_double_2_2”
“BSplineSmoothingOnUpdateDisplacementFieldTransform_double_3_3”
“BSplineSmoothingOnUpdateDisplacementFieldTransform_float_2_2”
“BSplineSmoothingOnUpdateDisplacementFieldTransform_float_3_3”
“BSplineTransform_double_2_2”
“BSplineTransform_double_3_3”
“BSplineTransform_float_2_2”
“BSplineTransform_float_3_3”
“CenteredAffineTransform_double_2_2”
“CenteredAffineTransform_double_3_3”
“CenteredAffineTransform_float_2_2”
“CenteredAffineTransform_float_3_3”
“CenteredEuler3DTransform_double_3_3”
“CenteredEuler3DTransform_float_3_3”
“CenteredRigid2DTransform_double_2_2”
“CenteredRigid2DTransform_float_2_2”
“CenteredSimilarity2DTransform_double_2_2”
“CenteredSimilarity2DTransform_float_2_2”
“ComposeScaleSkewVersor3DTransform_double_3_3”
“ComposeScaleSkewVersor3DTransform_float_3_3”
“CompositeTransform_double_2_2”
“CompositeTransform_double_3_3”
“CompositeTransform_double_4_4”
“CompositeTransform_float_2_2”
“CompositeTransform_float_3_3”
“CompositeTransform_float_4_4”
“ConstantVelocityFieldTransform_double_2_2”
“ConstantVelocityFieldTransform_double_3_3”
“ConstantVelocityFieldTransform_float_2_2”
“ConstantVelocityFieldTransform_float_3_3”
“DisplacementFieldTransform_double_2_2”
“DisplacementFieldTransform_double_3_3”
“DisplacementFieldTransform_float_2_2”
“DisplacementFieldTransform_float_3_3”
“Euler2DTransform_double_2_2”
“Euler2DTransform_float_2_2”
“Euler3DTransform_double_3_3”
“Euler3DTransform_float_3_3”
“FixedCenterOfRotationAffineTransform_double_3_3”
“FixedCenterOfRotationAffineTransform_float_3_3”
“GaussianExponentialDiffeomorphicTransform_double_2_2”
“GaussianExponentialDiffeomorphicTransform_double_3_3”
“GaussianExponentialDiffeomorphicTransform_float_2_2”
“GaussianExponentialDiffeomorphicTransform_float_3_3”
“GaussianSmoothingOnUpdateDisplacementFieldTransform_double_2_2”
“GaussianSmoothingOnUpdateDisplacementFieldTransform_double_3_3”
“GaussianSmoothingOnUpdateDisplacementFieldTransform_float_2_2”
“GaussianSmoothingOnUpdateDisplacementFieldTransform_float_3_3”
“GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform_double_2_2”
“GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform_double_3_3”
“GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform_float_2_2”
“GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform_float_3_3”
“IdentityTransform_double_2_2”
“IdentityTransform_double_3_3”
“IdentityTransform_double_4_4”
“IdentityTransform_float_2_2”
“IdentityTransform_float_3_3”
“IdentityTransform_float_4_4”
“QuaternionRigidTransform_double_3_3”
“QuaternionRigidTransform_float_3_3”
“Rigid2DTransform_double_2_2”
“Rigid2DTransform_float_2_2”
“Rigid3DPerspectiveTransform_double_3_2”
“Rigid3DPerspectiveTransform_float_3_2”
“Rigid3DTransform_double_3_3”
“Rigid3DTransform_float_3_3”
“ScalableAffineTransform_double_3_3”
“ScalableAffineTransform_float_3_3”
“ScaleLogarithmicTransform_double_3_3”
“ScaleLogarithmicTransform_float_3_3”
“ScaleSkewVersor3DTransform_double_3_3”
“ScaleSkewVersor3DTransform_float_3_3”
“ScaleTransform_double_2_2”
“ScaleTransform_double_3_3”
“ScaleTransform_double_4_4”
“ScaleTransform_float_2_2”
“ScaleTransform_float_3_3”
“ScaleTransform_float_4_4”
“ScaleVersor3DTransform_double_3_3”
“ScaleVersor3DTransform_float_3_3”
“Similarity2DTransform_double_2_2”
“Similarity2DTransform_float_2_2”
“Similarity3DTransform_double_3_3”
“Similarity3DTransform_float_3_3”
“ThinPlateSplineKernelTransform_double_3_3”
“ThinPlateSplineKernelTransform_float_3_3”
“TimeVaryingBSplineVelocityFieldTransform_double_2_2”
“TimeVaryingBSplineVelocityFieldTransform_double_3_3”
“TimeVaryingBSplineVelocityFieldTransform_float_2_2”
“TimeVaryingBSplineVelocityFieldTransform_float_3_3”
“TimeVaryingVelocityFieldTransform_double_2_2”
“TimeVaryingVelocityFieldTransform_double_3_3”
“TimeVaryingVelocityFieldTransform_float_2_2”
“TimeVaryingVelocityFieldTransform_float_3_3”
“TranslationTransform_double_2_2”
“TranslationTransform_double_3_3”
“TranslationTransform_double_4_4”
“TranslationTransform_float_2_2”
“TranslationTransform_float_3_3”
“TranslationTransform_float_4_4”
“VelocityFieldTransform_double_2_2”
“VelocityFieldTransform_double_3_3”
“VelocityFieldTransform_float_2_2”
“VelocityFieldTransform_float_3_3”
“VersorRigid3DTransform_double_3_3”
“VersorRigid3DTransform_float_3_3”
“VersorTransform_double_3_3”
“VersorTransform_float_3_3”
Resample Scalar/Vector/DWI Volume completed with errors”
I have attempted to troubleshoot the issue by reinstalling the software, but unfortunately, the problem persists.
If anyone in the community has experienced a similar issue or has any insights into resolving this problem, I would be extremely grateful for your assistance. Additionally, if there are any specific troubleshooting steps or configurations I should try, please do not hesitate to let me know.
Thank you very much for your time and assistance.
P.S. I’m using 5.6.1 stable release, but I’ve tried also 5.7.0 release (I’m ubuntu user).
