Parenchyma Analysis in CIP

Support
1

Please help me to see how I can batch import dicom files from the dicom database in the python console of 3d slicer, and use CIP_ParenchymaAnalysis under the CIP_ParenchymaAnalysis library for processing and analysis, and export data. I need to process and export in batches, because I have hundreds of Patient’s dicom files

2

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I want to load my CT files(.dcm)，a large number to deal with,and using Parenchyma Analysis and finally to export this table

3

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this is the table I want .I want to use python console to deal with a large number of CT files and use Parenchyma Analysis in Python console and export this table

4

You should probably start looking at the Script Repository and learn some Python. Alternatively, you could hire a programmer or consult ChatGPT for program snippets.

All your requests can be realized relatively simply.

1 Like
5

This type of batch workflow stuff would probably be a job for SlicerPipelines.

@rbumm Do you know if Parenchyma Analysis works with SlicerPipelines or could easily be made to work with it?

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6

I have not worked with SlicerPiplines before, just tested it a bit but do not see how I could integrate DICOM import or Parenchyma analsis in this extension … do you ?

7

Load DICOM files from a folder

Call a module (here Segmentstatistcs)

9

Thanks a lot.I will try this tutorial.

10

I don’t konw it.But I think maybe I can look throught the source code and try to run it in my scene.Thanks a lot.